Data sets can be found here (you may need to switch to “raw mode” to download CSV files)

name response_var clustered? grouping vars source object name (for Rdata) primary_reference secondary_refs response_type model_type tricky_bits
Arabidopsis total.fruits y reg+popu+gen+rack Banta.RData dat.tf Banta et al. (2010) example count GLMM singularity/regularization
Contraception use y district mlmRev package Steele et al. (1996) example binary GLMM quadratic effect of age
fire_diversity mamph_log;mbirds_log;mamm_log y flor_realms+biome+biome_FR ecoreg.rds Moritz et al. (2023) https://github.com/bbolker/mmd_utils/ continuous LMM singularity/regularization
Gopher tortoises shells y Site gopherdat2.RData Gdat Ozgul et al. (2009) https://bbolker.github.io/mixedmodels-misc/ecostats_chap.html count GLMM singularity/simplification
Owls SiblingNegotiation y Nest glmmTMB package Roulin & Bersier (2007) count ZIGLMM
seastar predation y block culcita.RData culcita_dat McKeon et al. (2012) https://bbolker.github.io/mixedmodels-misc/ecostats_chap.html binary GLMM separation
singing mouse Response y ID singingmouse.csv Pasch et al. (2013) count GLMM singularity/collapse count to binary
starling stmass y subjectnum starling.Rdata dataf Toby Marthews, r-help continuous LMM
ticks TICKS y BROOD+LOCATION Elston2001_tickdata.txt Elston et al. (2001) https://bbolker.github.io/mixedmodels-misc/ecostats_chap.html count GLMM
tundra NEE y Site tundra.csv Belshe et al. (2013) https://bbolker.github.io/mixedmodels-misc/ecostats_chap.html continuous LMM(AR1)
AIDS cases n aids.csv Dobson & Barnett (2008) count GLM
lizards grahami/opalinus n brglm package Schoener (1970) proportion GLM
sea turtle nesting du/notdu n dufemalepers.csv Tiwari et al. (2006) proportion GLM
cbpp incidence y herd lme4 package Lesnoff et al. (2004) proportion GLMM

References

Banta, J. A., Stevens, M. H. H., & Pigliucci, M. (2010). A comprehensive test of the ’limiting resources’ framework applied to plant tolerance to apical meristem damage. Oikos, 119(2), 359–369. http://doi.org/10.1111/j.1600-0706.2009.17726.x
Belshe, E. F., Schuur, E. A. G., & Bolker, B. M. (2013). Tundra ecosystems observed to be CO\(_2\) sources due to differential amplification of the carbon cycle. Ecology Letters, 16, 1307–1315. http://doi.org/10.1111/ele.12164
Dobson, A. J., & Barnett, A. (2008). An introduction to generalized linear models, third edition (3rd ed.). Chapman; Hall/CRC.
Elston, D. A., Moss, R., Boulinier, T., Arrowsmith, C., & Lambin, X. (2001). Analysis of aggregation, a worked example: Numbers of ticks on red grouse chicks. Parasitology, 122(5), 563–569.
Lesnoff, M., Laval, G., Bonnet, P., Abdicho, S., Workalemahu, A., Kifle, D., … Thiaucourt, F. (2004). Within-herd spread of contagious bovine pleuropneumonia in Ethiopian highlands. Preventive Veterinary Medicine, 64(1), 27–40. http://doi.org/10.1016/j.prevetmed.2004.03.005
McKeon, C. S., Stier, A., McIlroy, S., & Bolker, B. (2012). Multiple defender effects: Synergistic coral defense by mutualist crustaceans. Oecologia, 169(4), 1095–1103. http://doi.org/10.1007/s00442-012-2275-2
Moritz, M. A., Batllori, E., & Bolker, B. M. (2023). The role of fire in terrestrial vertebrate richness patterns. Ecology Letters, 26(4), 563–574. http://doi.org/10.1111/ele.14177
Ozgul, A., Oli, M. K., Bolker, B. M., & Perez-Heydrich, C. (2009). Upper respiratory tract disease, force of infection, and effects on survival of gopher tortoises. Ecological Applications, 19(3), 786–798. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/19425439
Pasch, B., Bolker, B. M., & Phelps, S. M. (2013). Interspecific dominance via vocal interactions mediates altitudinal zonation in neotropical singing mice. The American Naturalist, 182(5), E161–E173. http://doi.org/10.1086/673263
Roulin, A., & Bersier, L.-F. (2007). Nestling barn owls beg more intensely in the presence of their mother than in the presence of their father. Animal Behaviour, 74(4), 1099–1106. http://doi.org/10.1016/j.anbehav.2007.01.027
Schoener, T. W. (1970). Nonsynchronous Spatial Overlap of Lizards in Patchy Habitats. Ecology, 51(3), 408–418. http://doi.org/10.2307/1935376
Steele, F., Diamond, I., & Amin, S. (1996). Immunization uptake in rural Bangladesh: A multilevel analysis. Journal of the Royal Statistical Society A, 159, 289–299.
Tiwari, M., Bjorndal, K. A., Bolten, A. B., & Bolker, B. M. (2006). Evaluation of density-dependent processes and green turtle chelonia mydas hatchling production at Tortuguero, Costa Rica. Marine Ecology Progress Series, 326, 283–293.