UNDER CONSTRUCTION 11 Jan 2021
where is everything?
- GitHub pages (here): main content site (admin stuff, lecture
handouts)
- Avenue to
Learn:
dropboxes for completed assignments; marks; copies of course
material
- MS
Teams:
synchronous classes (Mon/Wed/Thurs 1:30-2:20 PM)
- Zulip: chat/forum
resources
admin
schedule
| 01 |
11-15 Jan |
intro + epidemic modeling 1 |
intro, epi1 , levins |
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11 Jan recording , 13 Jan blackboard , 14 Jan recording, 14 Jan blackboard |
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| 02 |
18-22 Jan |
epidemic modeling 2 |
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0 |
Levins (1966); Bolker (2008) sec 1.3 + DQs |
20 Jan recording , 20 Jan blackboard , 21 Jan recording, 21 Jan blackboard |
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| 03 |
25-29 Jan |
epidemic modeling 3 |
basic ODEs |
1 |
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25 Jan recording , 25 Jan blackboard , 27 Jan recording, 27 Jan blackboard |
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| 04 |
1-5 Feb |
more epidemic modeling |
final size notebook, estimating r |
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Shaw and Kennedy (2021) |
3 Feb recording , 3 Feb blackboard , 4 Feb recording, 4 Feb blackboard |
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| 05 |
8-12 Feb |
more epidemics! |
10 Feb code , 11 Feb code |
2 |
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8 Feb recording , 8 Feb blackboard , 10 Feb recording, 10 Feb blackboard , 11 Feb recording, 11 Feb blackboard |
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| 06 |
15-19 Feb |
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midterm break |
| 07 |
22-26 Feb |
epidemics + neurons |
neuro notes |
feedback poll, project draft |
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22 Feb recording , 22 Feb blackboard , 24 Feb recording, 24 Feb blackboard , 25 Feb recording, 25 Feb blackboard |
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| 08 |
01-05 Mar |
neuro 2 |
chaos notes |
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Innocenti et al. (2007) |
01 Mar recording, 01 Mar blackboard , 04 Mar blackboard |
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| 09 |
08-12 Mar |
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continuation notes , grind code , PyDSTool HR code |
midterm test (take-home, due Mon 15 Mar) |
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08 Mar recording , 08 Mar blackboard , 10 Mar recording , 10 Mar blackboard , 11 Mar recording (no 11 Mar blackboard) |
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| 10 |
15-19 Mar |
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Hopfield (1982) |
15 Mar: replication paper |
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| 11 |
22-26 Mar |
projects + disease evol |
disease evol notes , SEIR bifurc code |
replication exercise |
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25 Mar recording |
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| 12 |
29 Mar-2 Apr |
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| 13 |
5-9 Apr |
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| 14 |
12-14 Apr |
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presentations |
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28 Apr |
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projects due |
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References
Hopfield, J. J. 1982. “Neural Networks and Physical Systems with
Emergent Collective Computational Abilities.” Proceedings of the
National Academy of Sciences 79 (8): 2554–8.
https://doi.org/10.1073/pnas.79.8.2554.
Innocenti, Giacomo, Alice Morelli, Roberto Genesio, and Alessandro
Torcini. 2007. “Dynamical Phases of the Hindmarsh-Rose Neuronal Model:
Studies of the Transition from Bursting to Spiking Chaos.” Chaos: An
Interdisciplinary Journal of Nonlinear Science 17 (4): 043128.
https://doi.org/10.1063/1.2818153.
Levins, R. 1966. “The Strategy of Model Building in Population Biology.”
American Scientist 54: 421–31.
https://www.jstor.org/stable/27836590.
Shaw, Clara L., and David A. Kennedy. 2021. “What the Reproductive
Number R0 Can and Cannot Tell Us About COVID-19 Dynamics.” Theoretical
Population Biology, January.
https://doi.org/10.1016/j.tpb.2020.12.003.